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Home | Articles | Renal | Diagnosis, treatment and management of UTI in children (D&G)

Diagnosis, treatment and management of UTI in children (D&G)

Last updated 28th November 2024

Paediatric UTIs are becoming more problematic to treat due to increasing levels of antimicrobial resistance.  This guideline aims to encourage the appropriate collection of urinary samples, the prescription of appropriate empiric antimicrobials and the timely chasing of urine culture results.  Routine use of antibiotic prophylaxis is no longer recommended after UTIs in all ages (NICE 2018).  Prophylaxis may still be considered in specific circumstances.

Definitions

Upper tract symptomsLower tract symptomsFeatures of atypical UTI
Fever
Lethargy
Malaise
Vomiting
Loin pain
Non specific abdominal pain
Urgency of micturition
Frequency
Enuresis
Frank haematuria
Seriously unwell*
Sepsis
Poor urine flow
Abdominal/bladder mass
Failure to respond to sensitive antibiotic within 48 hours
Elevated creatinine
Non E.Coli, Klebsiella or enterococcus organism
*Note ‘seriously unwell’ includes patients who have had a septic screen
* NICE. 2013. Fever in under 5s: assessment and initial management [CG160]. Paragraph 1.2.2 (last updated August 2017)

Recurrent UTI: 
two or more episodes of proven UTI with upper tract symptoms within 12 months
OR
one episode of proven UTI with upper tract symptoms plus one or more episode of UTI with lower tract symptoms within 12 months
OR
three or more episodes of proven UTI with lower tract symptoms within 12 months.

Signs & Symptoms

Particularly in children < 1 yr of age, signs and symptoms of a UTI can be vague.  Collecting a urine for analysis should be considered in any infant or child with a temperature >38◦C with no clear source or in the context of a non specific illness.

Table 1 Presenting symptoms and signs in infants and children with UTI  (NICE 2018)

Age GroupSymptoms and Signs
Most Common
Symptoms and Signs
Less Common
Symptoms and Signs
Least Common
Infants <3months of ageFever
Vomiting
Lethargy
Irritability
Poor feeding
Failure to thrive
Abdominal pain
Jaundice
Haematuria
Offensive urine
Infants and children, 3 months or olderPre VerbalFeverAbdominal pain
Loin tenderness
Vomiting
Poor feeding
Lethargy
Irritability
Haematuria
Offensive urine
Failure to thrive
VerbalFrequency
Dysuria
Dysfunctional voiding
Changes to continence
Abdominal pain
Loin tenderness
Fever
Malaise
Vomiting
Haematuria
Offensive urine
Cloudy urine

Urine sample collection

A clean catch (CCU) in infants or mid stream specimen urine (MSSU) in children are the recommended methods for obtaining a urine sample.  Only social cleanliness and dryness are required.  If it is not possible to obtain a urine sample by these methods then it should be obtained by catheter or suprapubic aspirate (SPA).  All samples for microscopy and culture should be sent in a boric acid container

Urinalysis, microscopy and culture

Culture results provide the definitive information about the presence of a UTI and the causative organism.  A positive UTI is defined as > 100 000 (105) bacteria colony forming units/ml urine.  Antibiotic therapy may be guided by sensitivities obtained during culture.  Unfortunately, this information is not available at presentation and a decision on whether to initiate treatment is based on clinical symptoms, urinalysis and microscopy.

Urinalysis interpretation for all children under 16 years (NICE 2018)

LeucocytesNitrites
PositivePositiveTreat as UTI.  Send urine for culture.
NegativePositiveTreat as UTI.  Send urine for culture.
PositiveNegativeSend urine for microscopy and culture and await results.  Not for antibiotics unless good clinical evidence.
Caution with children under 12 months with UTI as can be nitrite negative.
NegativeNegativeUnlikely to be UTI.  Only send urine for culture if specific urinary symptoms.

Microscopy

Automated microscopy will routinely be performed on all urine samples sent to microbiology for culture.

Automated microscopy is performed using a Sysmex UF5000 (flow cytometry)

  • For all urine samples sent for culture, including Paediatrics. 
  • Exceptions: Grossly haematuric / pyuric urine samples
  • In DGRI it is available from 0845 – 1700 (Mon -Fri), 0800 – 1600 (Sat), and 0845 – 1300 (Sun)
  • Samples received outwith of these hours will be processed the following morning.

Urine cultures are routinely performed on:

  • Children <=5 years,
  • Children > 5 years, if flow cytromety results suggest infection likely
  • Transplant (any)
  • Immunosuppressed

Urine microscopy is indicated in infants < 3 months of age with a suspected UTI or as part of a septic screen for sepsis of unknown origin.  (It should be noted that even with a positive urine microscopy, a lumbar puncture should still be performed in all infants with fever who are less than 1 month and in all infants who are unwell between 1-3 months)1.

History and examination of confirmed UTI

The following risk factors for underlying pathology in the context of UTI should be considered within the history and examination

  • History suggesting previous UTI or confirmed previous UTI
  • Recurrent fever of uncertain origin
  • Antenatally diagnosed renal abnormality
  • Family history of vesicoureteric reflux (VUR) or renal disease *
  • Constipation
  • Dysfunctional voiding
  • Enlarged bladder or abdominal mass
  • Evidence of spinal lesion
  • Poor growth
  • Hypertension**

*VUR can be familial and increases risk of upper tract UTI

**blood pressure should be assessed according to height centiles:

Antibiotic Management

Urine culture is advised for all infants, children and adolescents for whom empiric antibiotic treatment for a UTI is considered.  If a child is known to nephrology or urology services or has had previous UTIs then please check previous urine culture results as this may influence empiric prescribing.

Any ESBL (Extended spectrum beta lactamase) producing organisms should be discussed with a microbiologist and/or acute paediatric team.

Please see empirical antibiotic therapy guideline for guidance on antibiotic treatment. Please record duration of treatment on HEPMA if admitted.

https://rightdecisions.scot.nhs.uk/nhs-dumfries-galloway-antimicrobial-handbook/hospital-paediatrics

For those patients discharged from the Emergency Department, advise the child’s parent/carer that the child should be improving within 48 hours. If the child is not improving or is clinically worsening, then the child should re-present to the Emergency Department.

The UTI factsheet should be issued to parents and carers in all cases where UTI is suspected. 

Most urine cultures will be reported at 48 hrs and all effort should be made to chase these results and amend the clinical management plan accordingly. If a bacterium grows which is resistant to the prescribed antibiotic and the child remains symptomatic, then change antibiotic as per sensitivities.

Prophylactic Antibiotics

he routine use of antibiotic prophylaxis after UTI is no longer recommended by NICE (2018), the American Academy of Pediatrics (2011), and the Canadian Pediatric Society (2015) due both to the lack of efficacy in preventing renal damage and the increasing prevalence of antibiotic resistance. 

This guidance does not apply to patients already known to nephrology or urology services who should be discussed with these services if the question of prophylaxis arises.

In the cases of infants under 3 months with UTI, children/infants with an atypical UTI (particularly under 6 months old) or recurrent UTIs (see definitions above), prophylaxis will be discussed on an individual basis during working hours with the consultant in charge of the patient’s care.

Whether antibiotic prophylaxis is prescribed or not parents and GPs should be aware that the child may have further UTIs and that subsequent symptoms suggestive of a UTI should result in:
a) the collection of a sample of urine for microbiological testing
b) the consideration of early empiric antibiotic treatment if clinically warranted
c) the pursuit of the urine test result and rationalisation of antibiotic prescription based on that result.

Where antibiotic prophylaxis is prescribed the risks/benefits should be discussed with parents and should be reviewed after 3-6 months with a view to stopping.  In some cases the renal or urology team may consider cycling of prophylaxis after discussion with microbiology and/or infectious diseases.

Where antibiotic prophylaxis is prescribed, trimethoprim is the first line choice antibiotic. The use of broad spectrum antibiotics e.g. co-amoxiclav or cefalexin should be avoided or used for a short period only in select cases. If a child’s UTI is trimethoprim resistant, then consideration should be given to adopting an early empiric management approach.  If prophylaxis is considered essential, then a risk/benefit discussion should happen with microbiology and/or infectious diseases.  Liquid nitrofurantoin is currently £460 per bottle and its use as prophylaxis should be in exceptional cases only.  (As previously mentioned, it is also contraindicated in infants < 3 months).

Imaging

All male infants < 3 months of age who have a UTI should have an USS, an MCUG and a DMSA.  Female infants < 3 months will all require an USS but will only require an MCUG and DMSA if they in the atypical UTI category (See UTI definitions).  A febrile infant of < 3 months will often be considered to be seriously unwell and therefore in the atypical UTI category – for example, if they have had a septic screen.  (NICE 2013.  Fever in under 5s assessment and initial management [CG160]. Paragraph 1.2.2 ). 

Imaging in Infants <6 months (NICE 2018)

*If the only feature of atypical UTI is infection with a NON E.coli, Enterococcus or Klebsiella organism UTI, and infant is responding well to antibiotics and with no other features of atypical infection, USS can be performed within 6 weeks.

**When an MCUG is requested, it is the requestor’s responsibility to organise antibiotic cover (prophylactic dose) for 5 days with the MCUG occurring on day 3. In patients who are already on prophylaxis, they should receive treatment dose antibiotics for 3 days with the MCUG occurring on day 2.

If any infant has an abnormal USS, particularly if an obstructive uropathy is suspected, they should be discussed with the renal/urology team regarding timing of further imaging and ongoing management.

Imaging in children 6 months up to 3 years (NICE 2018)

* In an infant or child with a non E.coli, Enterococcus or Klebsiella organism UTI, who is responding well to antibiotics and with no other features of atypical infection, USS can be performed within 6 weeks.

MCUG is not routinely indicated in this age group but may be considered if there is dilatation on USS, poor urinary flow, atypical causative organism or family history of vesicoureteric reflux (VUR).  In the continent child, a MAG 3 is an alternative study to give information about reflux and drainage.

Imaging in children 3 years or older

* In an infant or child with a non E.coli, Enterococcus or Klebsiella organism UTI, who is responding well to antibiotics and with no other features of atypical infection, USS can be performed within 6 weeks.

As with the 6 months – 3 year age group, if USS suggests dilatation, further discussion with renal/urology is recommended for consideration of further imaging to give information on reflux and drainage.

For information about imaging tests parents can be directed to www.infokid.org.uk

Follow up for inpatients

Any infant or child who has had imaging requested as an outpatient requires outpatient clinic follow up.  This will include all infants under 6 months, children under 3 years with atypical features and any children who have had recurrent UTIs.  At times it may be difficult to establish if a child fits the definition of proven recurrent UTIs.  If there is any ambiguity, these patients should be discussed with the receiving general paediatric consultant prior to requesting imaging and referral.  Prophylaxis for proven recurrent UTIs in patients who do not require admission should be discussed in outpatient clinic and not commenced in the acute setting.   Follow up for children over 3 years who have had an atypical UTI but with a normal USS during the acute episode and no further imaging is required, should also be discussed with their general paediatric consultant.  

ED management of positive urine culture results (patient discharged from ED)

Positive urine culture noted. ED consultant will review the case and:

  • Ensure an appropriate antibiotic has been prescribed / check culture sensitivities – contact parent / GP to arrange prescription if action required.
  • If patient <3 months of age then refer to acute paediatric team to arrange clinical review in PSSAU.
  • Any ESBL producing organisms should be discussed with microbiology and/or on call Paediatrician
  • Assess if follow up imaging is required:
    If recurrent UTI in <6month old or atypical organism in all ages the the patient should be discussed with Paediatrics for consideration of assessment +/- imaging.
  • All other children requiring follow up imaging (USS / MCUG / DMSA) will be referred to Paediatrics